Package: swaRmverse 0.1.1
Marina Papadopoulou
swaRmverse: Swarm Space Creation
Provides a pipeline for the comparative analysis of collective movement data (e.g. fish schools, bird flocks, baboon troops) by processing 2-dimensional positional data (x,y,t) from GPS trackers or computer vision tracking systems, discretizing events of collective motion, calculating a set of established metrics that characterize each event, and placing the events in a multi-dimensional swarm space constructed from these metrics. The swarm space concept, the metrics and data sets included are described in: Papadopoulou Marina, Furtbauer Ines, O'Bryan Lisa R., Garnier Simon, Georgopoulou Dimitra G., Bracken Anna M., Christensen Charlotte and King Andrew J. (2023) <doi:10.1098/rstb.2022.0068>.
Authors:
swaRmverse_0.1.1.tar.gz
swaRmverse_0.1.1.zip(r-4.5)swaRmverse_0.1.1.zip(r-4.4)swaRmverse_0.1.1.zip(r-4.3)
swaRmverse_0.1.1.tgz(r-4.4-any)swaRmverse_0.1.1.tgz(r-4.3-any)
swaRmverse_0.1.1.tar.gz(r-4.5-noble)swaRmverse_0.1.1.tar.gz(r-4.4-noble)
swaRmverse_0.1.1.tgz(r-4.4-emscripten)swaRmverse_0.1.1.tgz(r-4.3-emscripten)
swaRmverse.pdf |swaRmverse.html✨
swaRmverse/json (API)
NEWS
| # Install 'swaRmverse' in R: |
| install.packages('swaRmverse', repos = c('https://marinapapa.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/marinapapa/swarmverse/issues
- multi_species_metrics - Multi-Species Collective Motion Metrics
- multi_species_pca - Multi-Species PCA
- multi_species_pca_data - Multi-Species PCA Data
- new_species_metrics - The Collective Motion Metrics of a New Species
Last updated 1 months agofrom:ddda2b9c1a. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 09 2024 |
| R-4.5-win | OK | Nov 09 2024 |
| R-4.5-linux | OK | Nov 09 2024 |
| R-4.4-win | OK | Nov 09 2024 |
| R-4.4-mac | OK | Nov 09 2024 |
| R-4.3-win | OK | Nov 09 2024 |
| R-4.3-mac | OK | Nov 09 2024 |
Exports:add_rel_pos_coordsadd_set_velsadd_velocitiescalc_dur_per_eventcol_motion_metricscol_motion_metrics_from_rawdefine_eventsevent_metricsevents_durevents_nevents_summaryexpand_pca_swarm_spacefrontnessget_event_idsgroup_metricsgroup_metrics_per_setgroup_shapemoving_averagenn_metricsnnbanormalize_datapairwise_metricspick_thresholdset_data_formatswarm_space
Dependencies:classclassIntclicpp11data.tableDBIdplyre1071fansigenericsgeosphereglueKernSmoothlatticelifecyclelubridatemagrittrMASSpbapplypillarpkgconfigproxyR6RcpprlangRtsnes2sfspsplancsswaRmtibbletidyselecttimechangetrackdfunitsutf8vctrswithrwk
1 - Data Preparation
Rendered fromstep1_data_preparation.Rmdusingknitr::rmarkdownon Nov 09 2024.Last update: 2024-03-12
Started: 2022-12-29
2 - Data Analysis
Rendered fromstep2_data_analysis.Rmdusingknitr::rmarkdownon Nov 09 2024.Last update: 2024-10-10
Started: 2023-03-21
3 - The Swarm-Verse
Rendered fromstep3_swarm_space.Rmdusingknitr::rmarkdownon Nov 09 2024.Last update: 2024-02-27
Started: 2023-03-21
