Package: swaRmverse 0.1.0

Marina Papadopoulou

swaRmverse: Swarm Space Creation

Provides a pipeline for the comparative analysis of collective movement data (e.g. fish schools, bird flocks, baboon troops) by processing 2-dimensional positional data (x,y,t) from GPS trackers or computer vision tracking systems, discretizing events of collective motion, calculating a set of established metrics that characterize each event, and placing the events in a multi-dimensional swarm space constructed from these metrics. The swarm space concept, the metrics and data sets included are described in: Papadopoulou Marina, Furtbauer Ines, O'Bryan Lisa R., Garnier Simon, Georgopoulou Dimitra G., Bracken Anna M., Christensen Charlotte and King Andrew J. (2023) <doi:10.1098/rstb.2022.0068>.

Authors:Marina Papadopoulou [aut, cre], Simon Garnier [ctb, cph]

swaRmverse_0.1.0.tar.gz
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swaRmverse.pdf |swaRmverse.html✨
swaRmverse/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/marinapapa/swarmverse/issues

On CRAN:

25 exports 1.46 score 40 dependencies 7 scripts 132 downloads

Last updated 6 months agofrom:0186f12748. Checks:OK: 5 NOTE: 2. Indexed: yes.

Exports:add_rel_pos_coordsadd_set_velsadd_velocitiescalc_dur_per_eventcol_motion_metricscol_motion_metrics_from_rawdefine_eventsevent_metricsevents_durevents_nevents_summaryexpand_pca_swarm_spacefrontnessget_event_idsgroup_metricsgroup_metrics_per_setgroup_shapemoving_averagenn_metricsnnbanormalize_datapairwise_metricspick_thresholdset_data_formatswarm_space

Dependencies:classclassIntclicpp11data.tableDBIdplyre1071fansigenericsgeosphereglueKernSmoothlatticelifecyclelubridatemagrittrMASSpbapplypillarpkgconfigproxyR6RcpprlangRtsnes2sfspsplancsswaRmtibbletidyselecttimechangetrackdfunitsutf8vctrswithrwk