Package: swaRmverse 0.1.1

Marina Papadopoulou

swaRmverse: Swarm Space Creation

Provides a pipeline for the comparative analysis of collective movement data (e.g. fish schools, bird flocks, baboon troops) by processing 2-dimensional positional data (x,y,t) from GPS trackers or computer vision tracking systems, discretizing events of collective motion, calculating a set of established metrics that characterize each event, and placing the events in a multi-dimensional swarm space constructed from these metrics. The swarm space concept, the metrics and data sets included are described in: Papadopoulou Marina, Furtbauer Ines, O'Bryan Lisa R., Garnier Simon, Georgopoulou Dimitra G., Bracken Anna M., Christensen Charlotte and King Andrew J. (2023) <doi:10.1098/rstb.2022.0068>.

Authors:Marina Papadopoulou [aut, cre], Simon Garnier [ctb, cph]

swaRmverse_0.1.1.tar.gz
swaRmverse_0.1.1.zip(r-4.7-any)swaRmverse_0.1.1.zip(r-4.6-any)swaRmverse_0.1.1.zip(r-4.5-any)
swaRmverse_0.1.1.tgz(r-4.6-any)swaRmverse_0.1.1.tgz(r-4.5-any)
swaRmverse_0.1.1.tar.gz(r-4.7-any)swaRmverse_0.1.1.tar.gz(r-4.6-any)
swaRmverse_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
swaRmverse/json (API)

# Install 'swaRmverse' in R:
install.packages('swaRmverse', repos = c('https://marinapapa.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/marinapapa/swarmverse/issues

Pkgdown/docs site:https://marinapapa.github.io

Datasets:

On CRAN:

Conda:

4.91 score 3 stars 18 scripts 249 downloads 25 exports 39 dependencies

Last updated from:ddda2b9c1a. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK144
source / vignettesOK237
linux-releaseOK144
macos-releaseOK128
macos-oldrelOK144
windows-develOK81
windows-releaseOK77
windows-oldrelOK93
wasm-releaseOK140

Exports:add_rel_pos_coordsadd_set_velsadd_velocitiescalc_dur_per_eventcol_motion_metricscol_motion_metrics_from_rawdefine_eventsevent_metricsevents_durevents_nevents_summaryexpand_pca_swarm_spacefrontnessget_event_idsgroup_metricsgroup_metrics_per_setgroup_shapemoving_averagenn_metricsnnbanormalize_datapairwise_metricspick_thresholdset_data_formatswarm_space

Dependencies:classclassIntclicpp11data.tableDBIdplyre1071genericsgeosphereglueKernSmoothlatticelifecyclelubridatemagrittrMASSpbapplypillarpkgconfigproxyR6RcpprlangRtsnes2sfspsplancsswaRmtibbletidyselecttimechangetrackdfunitsutf8vctrswithrwk

2 - Data Analysis
2.1 Velocity estimations | 2.2 Group characteristics | 2.3 Pairwise measurements | 2.4 Metrics of collective motion
Rendered fromstep2_data_analysis.Rmdusingknitr::rmarkdown

Last update: 2024-10-10
Started: 2023-03-21

1 - Data Preparation
1.1 Input data - trackdf | 1.2 Transform data | 1.3 Multi-species or multi-context data
Rendered fromstep1_data_preparation.Rmdusingknitr::rmarkdown

Last update: 2024-03-12
Started: 2022-12-29

3 - The Swarm-Verse
3.1 Load data | 3.2 Build swarm space | 3.3 Expand existing swarm space | 3.4 Your own swarm space
Rendered fromstep3_swarm_space.Rmdusingknitr::rmarkdown

Last update: 2024-02-27
Started: 2023-03-21